SDA (SDA flex)  7.2
Simulation of Diffusional Association
Functions/Subroutines
dcc.f90 File Reference

Functions/Subroutines

program dcc
 
subroutine compute_for_bin (p_sogrid, bin, rad, dtrans, drot)
 Retrun value of diffusion and h-radius for a given bin. More...
 
real(kind=8) function distance_to_center (position)
 

Detailed Description

Version
{version 7.2.3 (2019)}

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References: see also http://mcm.h-its.org/sda7/do:c/doc_sda7/references.html:

Brownian dynamics simulation of protein-protein diffusional encounter. (1998) Methods, 14, 329-341.

SDA 7: A modular and parallel implementation of the simulation of diffusional association software. Journal of computational chemistry 36.21 (2015): 1631-1645.

Authors: M.Martinez, N.J.Bruce, J.Romanowska, D.B.Kokh, P.Mereghetti, X. Yu, M. Ozboyaci, M. Reinhardt, P. Friedrich, R.R.Gabdoulline, S.Richter and R.C.Wade


Tool to estimate translational and rotational diffusion coefficient

Function/Subroutine Documentation

◆ compute_for_bin()

subroutine compute_for_bin ( type ( sogrid ), pointer  p_sogrid,
real(kind=8)  bin,
real(kind=8), intent(out)  rad,
real(kind=8), intent(out)  dtrans,
real(kind=8), intent(out)  drot 
)

Retrun value of diffusion and h-radius for a given bin.

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◆ dcc()

program dcc
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◆ distance_to_center()

real(kind=8) function distance_to_center ( real(kind=8), dimension(:)  position)
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