accept | change_conformation | |
accepted_new_conf | change_conformation | |
array_energy | change_conformation | |
array_energy_1d | change_conformation | |
array_energy_sda2prot | change_conformation | |
array_energy_sda2prot_1d | change_conformation | |
array_energy_sdamm | change_conformation | |
bool_escape | change_conformation | |
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation | |
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation | |
change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation | |
check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) | change_conformation | |
check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) | change_conformation | |
check_reaction_pair_sdamm(tab_protein, set1, set2, rcriteria, geom, sum_time, dtnow, array_close, nclose, close) | change_conformation | |
clos1 | change_conformation | |
compute_rdf(resid_time, tab_protein, geom) | change_conformation | |
convert_to_record_format(array_energy, array_energy_1d, max_bit_energy) | change_conformation | |
correct_format_energy | change_conformation | |
current_conf | change_conformation | |
current_occur | change_conformation | |
current_run | change_conformation | |
current_run_check | change_conformation | |
current_step | change_conformation | |
cut2 | change_conformation | |
dist | change_conformation | |
dm | change_conformation | |
dm30 | change_conformation | |
dt | change_conformation | |
dtnow | change_conformation | |
dummy_array | change_conformation | |
dummy_array_protein | change_conformation | |
f | change_conformation | |
f_img | change_conformation | |
force | change_conformation | |
geom | change_conformation | |
global_steps_record | change_conformation | |
half_box | change_conformation | |
hit | change_conformation | |
i | change_conformation | |
ierr | change_conformation | |
iflex | change_conformation | |
init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) | change_conformation | |
init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) | change_conformation | |
io_err | change_conformation | |
io_error | change_conformation | |
j | change_conformation | |
k | change_conformation | |
local_escape | change_conformation | |
local_fpt | change_conformation | |
local_sumtime | change_conformation | |
local_visited_windows | change_conformation | |
make_bd_move_2prot(prot1, prot2, geom, force, torque, torque1, dtnow, dist, rhit, hit, accept, escape, total_overlap, ignore_excl, iimg_hydro, old_rotation, surface_height) | change_conformation | |
make_bd_move_sdamm(tab_prot, geom, nb_prot, force, torque, dt, iimg_hydro, old_rotation, surface_height) | change_conformation | |
max_energy_terms | change_conformation | |
mrot | change_conformation | |
n_rdfs | change_conformation | |
n_repeat_occur | change_conformation | |
nb_overlap | change_conformation | |
nb_overlap_flex | change_conformation | |
nb_prot1 | change_conformation | |
nb_prot2 | change_conformation | |
nb_protein | change_conformation | |
nboost_all | change_conformation | |
nmax_overlap | change_conformation | |
nrun | change_conformation | |
nstep_all | change_conformation | |
o_complexes | change_conformation | |
o_complexes | change_conformation | |
old_rotation | change_conformation | |
option_omp | change_conformation | |
overlap | change_conformation | |
p_local_complexe | change_conformation | |
p_restart | change_conformation | |
p_tmp_onecomplexe | change_conformation | |
param_analytic | change_conformation | |
param_force_energy | change_conformation | |
param_metaldesolv | change_conformation | |
param_probe | change_conformation | |
param_timestep | change_conformation | |
pos_relat | change_conformation | |
print_step | change_conformation | |
print_step_compl | change_conformation | |
print_step_traj | change_conformation | |
protein1 | change_conformation | |
protein2 | change_conformation | |
ptab_protein | change_conformation | |
rboost | change_conformation | |
rcrit_met | change_conformation | |
rcriteria | change_conformation | |
resid_time | change_conformation | |
rhit | change_conformation | |
run_done | change_conformation | |
size_array_energy | change_conformation | |
size_array_energy_sda2prot | change_conformation | |
size_array_energy_sda2prot_1d | change_conformation | |
status | change_conformation | |
steps_record | change_conformation | |
steps_str | change_conformation | |
t | change_conformation | |
t1 | change_conformation | |
tab_protein | change_conformation | |
tab_protein | change_conformation | |
tab_protein_unique | change_conformation | |
time | change_conformation | |
time_all | change_conformation | |
time_per_run | change_conformation | |
timehit | change_conformation | |
timemax | change_conformation | |
timer_bd | change_conformation | |
timer_complexes | change_conformation | |
timer_energy | change_conformation | |
timer_exchk | change_conformation | |
timer_flex | change_conformation | |
timer_force | change_conformation | |
timer_rdf | change_conformation | |
timer_reactpair | change_conformation | |
timer_record | change_conformation | |
timer_update_rate | change_conformation | |
torque | change_conformation | |
total_accepted_new_conf | change_conformation | |
total_energy | change_conformation | |
total_occur | change_conformation | |
total_overlap | change_conformation | |
total_overlap_flex | change_conformation | |
total_test_change_conformation | change_conformation | |
trajectories | change_conformation | |
trajectories | change_conformation | |
type_calc | change_conformation | |