SDA (SDA flex)  7.2
Simulation of Diffusional Association
Modules | Functions/Subroutines | Variables
mod_par_zig.f90 File Reference

Thread-safe random generator with the ziggurat method. More...

Modules

module  par_zig_mod
 For use with OpenMP.
 

Functions/Subroutines

subroutine, public par_zig_mod::par_zigset (npar, par_jsrseed, grainsize)
 
subroutine, public par_zig_mod::delete_par_zig (dummy)
 
integer function, public par_zig_mod::par_shr3 (kpar)
 
real(dp) function, public par_zig_mod::par_uni (kpar)
 
real(dp) function, public par_zig_mod::par_rnor (kpar)
 
real(dp) function, public par_zig_mod::par_rexp (kpar)
 
subroutine, public par_zig_mod::generate_seed_from_clock (seed)
 suffer overflow, not sure correct in original case More...
 

Variables

integer, parameter par_zig_mod::dp =SELECTED_REAL_KIND( 12, 60 )
 
real(dp), parameter par_zig_mod::m1 =2147483648.0_DP
 
real(dp), parameter par_zig_mod::m2 =2147483648.0_DP
 
real(dp), parameter par_zig_mod::half =0.5_DP
 
real(dp), parameter par_zig_mod::dn0 =3.442619855899_DP
 
real(dp), parameter par_zig_mod::tn0 =3.442619855899_DP
 
real(dp), parameter par_zig_mod::vn =0.00991256303526217_DP
 
real(dp), parameter par_zig_mod::de0 =7.697117470131487_DP
 
real(dp), parameter par_zig_mod::te0 =7.697117470131487_DP
 
real(dp), parameter par_zig_mod::ve =0.003949659822581572_DP
 
integer, save par_zig_mod::par_n = 0
 
integer, save par_zig_mod::par_step
 
integer, dimension(:), allocatable, save par_zig_mod::par_jsr
 
integer, dimension(:,:), allocatable, save par_zig_mod::par_kn
 
integer, dimension(:,:), allocatable, save par_zig_mod::par_ke
 
real(dp), dimension(:,:), allocatable, save par_zig_mod::par_wn
 
real(dp), dimension(:,:), allocatable, save par_zig_mod::par_fn
 
real(dp), dimension(:,:), allocatable, save par_zig_mod::par_we
 
real(dp), dimension(:,:), allocatable, save par_zig_mod::par_fe
 

Detailed Description

Thread-safe random generator with the ziggurat method.

Version
{version 7.2.3 (2019)}

Copyright (c) 2009, 2010, 2015, 2016, 2019 Heidelberg Institute of Theoretical Studies (HITS, www.h-its.org) Schloss-Wolfsbrunnenweg 35 69118 Heidelberg, Germany

Please send your contact address to get information on updates and new features to "mcmsoft@h-its.org". Questions will be answered as soon as possible.

References: see also http://mcm.h-its.org/sda7/do:c/doc_sda7/references.html:

Brownian dynamics simulation of protein-protein diffusional encounter. (1998) Methods, 14, 329-341.

SDA 7: A modular and parallel implementation of the simulation of diffusional association software. Journal of computational chemistry 36.21 (2015): 1631-1645.

Authors: M.Martinez, N.J.Bruce, J.Romanowska, D.B.Kokh, P.Mereghetti, X. Yu, M. Ozboyaci, M. Reinhardt, P. Friedrich, R.R.Gabdoulline, S.Richter and R.C.Wade


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