| accept | change_conformation | |
| accepted_new_conf | change_conformation | |
| array_energy | change_conformation | |
| array_energy_1d | change_conformation | |
| array_energy_sda2prot | change_conformation | |
| array_energy_sda2prot_1d | change_conformation | |
| array_energy_sdamm | change_conformation | |
| bool_escape | change_conformation | |
| change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation | |
| change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation | |
| change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation | |
| check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) | change_conformation | |
| check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) | change_conformation | |
| check_reaction_pair_sdamm(tab_protein, set1, set2, rcriteria, geom, sum_time, dtnow, array_close, nclose, close) | change_conformation | |
| clos1 | change_conformation | |
| compute_rdf(resid_time, tab_protein, geom) | change_conformation | |
| convert_to_record_format(array_energy, array_energy_1d, max_bit_energy) | change_conformation | |
| correct_format_energy | change_conformation | |
| current_conf | change_conformation | |
| current_occur | change_conformation | |
| current_run | change_conformation | |
| current_step | change_conformation | |
| cut2 | change_conformation | |
| dist | change_conformation | |
| dm | change_conformation | |
| dm30 | change_conformation | |
| dt | change_conformation | |
| dtnow | change_conformation | |
| dummy_array | change_conformation | |
| dummy_array_protein | change_conformation | |
| f | change_conformation | |
| force | change_conformation | |
| geom | change_conformation | |
| global_steps_record | change_conformation | |
| half_box | change_conformation | |
| hit | change_conformation | |
| i | change_conformation | |
| ierr | change_conformation | |
| iflex | change_conformation | |
| init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) | change_conformation | |
| init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) | change_conformation | |
| io_err | change_conformation | |
| j | change_conformation | |
| k | change_conformation | |
| local_escape | change_conformation | |
| local_fpt | change_conformation | |
| local_sumtime | change_conformation | |
| local_visited_windows | change_conformation | |
| make_bd_move_2prot(prot1, prot2, geom, force, torque, torque1, dtnow, dist, rhit, hit, accept, escape, total_overlap, ignore_excl) | change_conformation | |
| make_bd_move_sdamm(tab_prot, geom, nb_prot, force, torque, dt) | change_conformation | |
| max_energy_terms | change_conformation | |
| mrot | change_conformation | |
| n_rdfs | change_conformation | |
| n_repeat_occur | change_conformation | |
| nb_overlap | change_conformation | |
| nb_overlap_flex | change_conformation | |
| nb_prot1 | change_conformation | |
| nb_prot2 | change_conformation | |
| nb_protein | change_conformation | |
| nboost_all | change_conformation | |
| nmax_overlap | change_conformation | |
| nrun | change_conformation | |
| nstep_all | change_conformation | |
| o_complexes | change_conformation | |
| o_complexes | change_conformation | |
| option_omp | change_conformation | |
| overlap | change_conformation | |
| p_local_complexe | change_conformation | |
| p_restart | change_conformation | |
| p_tmp_onecomplexe | change_conformation | |
| param_analytic | change_conformation | |
| param_force_energy | change_conformation | |
| param_metaldesolv | change_conformation | |
| param_probe | change_conformation | |
| param_timestep | change_conformation | |
| pos_relat | change_conformation | |
| print_step | change_conformation | |
| print_step_compl | change_conformation | |
| print_step_traj | change_conformation | |
| protein1 | change_conformation | |
| protein2 | change_conformation | |
| ptab_protein | change_conformation | |
| rboost | change_conformation | |
| rcrit_met | change_conformation | |
| rcriteria | change_conformation | |
| resid_time | change_conformation | |
| rhit | change_conformation | |
| run_done | change_conformation | |
| size_array_energy | change_conformation | |
| size_array_energy_sda2prot | change_conformation | |
| size_array_energy_sda2prot_1d | change_conformation | |
| status | change_conformation | |
| steps_record | change_conformation | |
| steps_str | change_conformation | |
| t | change_conformation | |
| t1 | change_conformation | |
| tab_protein | change_conformation | |
| tab_protein | change_conformation | |
| tab_protein_unique | change_conformation | |
| time | change_conformation | |
| time_all | change_conformation | |
| time_per_run | change_conformation | |
| timehit | change_conformation | |
| timemax | change_conformation | |
| timer_bd | change_conformation | |
| timer_complexes | change_conformation | |
| timer_energy | change_conformation | |
| timer_exchk | change_conformation | |
| timer_flex | change_conformation | |
| timer_force | change_conformation | |
| timer_rdf | change_conformation | |
| timer_reactpair | change_conformation | |
| timer_record | change_conformation | |
| timer_update_rate | change_conformation | |
| torque | change_conformation | |
| total_accepted_new_conf | change_conformation | |
| total_energy | change_conformation | |
| total_occur | change_conformation | |
| total_overlap | change_conformation | |
| total_overlap_flex | change_conformation | |
| total_test_change_conformation | change_conformation | |
| trajectories | change_conformation | |
| trajectories | change_conformation | |
| type_calc | change_conformation | |