| accept | change_conformation |  | 
  | accepted_new_conf | change_conformation |  | 
  | array_energy | change_conformation |  | 
  | array_energy_1d | change_conformation |  | 
  | array_energy_sda2prot | change_conformation |  | 
  | array_energy_sda2prot_1d | change_conformation |  | 
  | array_energy_sdamm | change_conformation |  | 
  | bool_escape | change_conformation |  | 
  | change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation |  | 
  | change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation |  | 
  | change_conformation(prot, tab_prot, geom, param_force_energy, param_metal, type_calc, dummy_array, hit, accepted, nb_overlap_flex, ptrf_energy) | change_conformation |  | 
  | check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) | change_conformation |  | 
  | check_reaction_pair(prot1, prot2, rcriteria, visited_windows, escape, sum_time, first_time, time, dtnow, close) | change_conformation |  | 
  | check_reaction_pair_sdamm(tab_protein, set1, set2, rcriteria, geom, sum_time, dtnow, array_close, nclose, close) | change_conformation |  | 
  | clos1 | change_conformation |  | 
  | compute_rdf(resid_time, tab_protein, geom) | change_conformation |  | 
  | convert_to_record_format(array_energy, array_energy_1d, max_bit_energy) | change_conformation |  | 
  | correct_format_energy | change_conformation |  | 
  | current_conf | change_conformation |  | 
  | current_occur | change_conformation |  | 
  | current_run | change_conformation |  | 
  | current_step | change_conformation |  | 
  | cut2 | change_conformation |  | 
  | dist | change_conformation |  | 
  | dm | change_conformation |  | 
  | dm30 | change_conformation |  | 
  | dt | change_conformation |  | 
  | dtnow | change_conformation |  | 
  | dummy_array | change_conformation |  | 
  | dummy_array_protein | change_conformation |  | 
  | f | change_conformation |  | 
  | force | change_conformation |  | 
  | geom | change_conformation |  | 
  | global_steps_record | change_conformation |  | 
  | half_box | change_conformation |  | 
  | hit | change_conformation |  | 
  | i | change_conformation |  | 
  | ierr | change_conformation |  | 
  | iflex | change_conformation |  | 
  | init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) | change_conformation |  | 
  | init_time(param_timestep, geom, dist, rhit, dm30, dtnow, hit) | change_conformation |  | 
  | io_err | change_conformation |  | 
  | j | change_conformation |  | 
  | k | change_conformation |  | 
  | local_escape | change_conformation |  | 
  | local_fpt | change_conformation |  | 
  | local_sumtime | change_conformation |  | 
  | local_visited_windows | change_conformation |  | 
  | make_bd_move_2prot(prot1, prot2, geom, force, torque, torque1, dtnow, dist, rhit, hit, accept, escape, total_overlap, ignore_excl) | change_conformation |  | 
  | make_bd_move_sdamm(tab_prot, geom, nb_prot, force, torque, dt) | change_conformation |  | 
  | max_energy_terms | change_conformation |  | 
  | mrot | change_conformation |  | 
  | n_rdfs | change_conformation |  | 
  | n_repeat_occur | change_conformation |  | 
  | nb_overlap | change_conformation |  | 
  | nb_overlap_flex | change_conformation |  | 
  | nb_prot1 | change_conformation |  | 
  | nb_prot2 | change_conformation |  | 
  | nb_protein | change_conformation |  | 
  | nboost_all | change_conformation |  | 
  | nmax_overlap | change_conformation |  | 
  | nrun | change_conformation |  | 
  | nstep_all | change_conformation |  | 
  | o_complexes | change_conformation |  | 
  | o_complexes | change_conformation |  | 
  | option_omp | change_conformation |  | 
  | overlap | change_conformation |  | 
  | p_local_complexe | change_conformation |  | 
  | p_restart | change_conformation |  | 
  | p_tmp_onecomplexe | change_conformation |  | 
  | param_analytic | change_conformation |  | 
  | param_force_energy | change_conformation |  | 
  | param_metaldesolv | change_conformation |  | 
  | param_probe | change_conformation |  | 
  | param_timestep | change_conformation |  | 
  | pos_relat | change_conformation |  | 
  | print_step | change_conformation |  | 
  | print_step_compl | change_conformation |  | 
  | print_step_traj | change_conformation |  | 
  | protein1 | change_conformation |  | 
  | protein2 | change_conformation |  | 
  | ptab_protein | change_conformation |  | 
  | rboost | change_conformation |  | 
  | rcrit_met | change_conformation |  | 
  | rcriteria | change_conformation |  | 
  | resid_time | change_conformation |  | 
  | rhit | change_conformation |  | 
  | run_done | change_conformation |  | 
  | size_array_energy | change_conformation |  | 
  | size_array_energy_sda2prot | change_conformation |  | 
  | size_array_energy_sda2prot_1d | change_conformation |  | 
  | status | change_conformation |  | 
  | steps_record | change_conformation |  | 
  | steps_str | change_conformation |  | 
  | t | change_conformation |  | 
  | t1 | change_conformation |  | 
  | tab_protein | change_conformation |  | 
  | tab_protein | change_conformation |  | 
  | tab_protein_unique | change_conformation |  | 
  | time | change_conformation |  | 
  | time_all | change_conformation |  | 
  | time_per_run | change_conformation |  | 
  | timehit | change_conformation |  | 
  | timemax | change_conformation |  | 
  | timer_bd | change_conformation |  | 
  | timer_complexes | change_conformation |  | 
  | timer_energy | change_conformation |  | 
  | timer_exchk | change_conformation |  | 
  | timer_flex | change_conformation |  | 
  | timer_force | change_conformation |  | 
  | timer_rdf | change_conformation |  | 
  | timer_reactpair | change_conformation |  | 
  | timer_record | change_conformation |  | 
  | timer_update_rate | change_conformation |  | 
  | torque | change_conformation |  | 
  | total_accepted_new_conf | change_conformation |  | 
  | total_energy | change_conformation |  | 
  | total_occur | change_conformation |  | 
  | total_overlap | change_conformation |  | 
  | total_overlap_flex | change_conformation |  | 
  | total_test_change_conformation | change_conformation |  | 
  | trajectories | change_conformation |  | 
  | trajectories | change_conformation |  | 
  | type_calc | change_conformation |  |