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projects:tauramddescription [2026/06/17 10:18] – [RAMD and its applications (using the implementation in Gromacs) are described in:] wadeprojects:tauramddescription [2026/06/17 10:20] (current) – [Key Information and References for RAMD and tauRAMD] wade
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 In addition, scripts for  [[https://github.com/HITS-MCM/tauRAMD|tauRAMD]] and [[https://github.com/HITS-MCM/MD-IFP |MD-IFP (Interaction FingerPrint Analysis of Molecular Dynamics trajectories)]] are available.  In addition, scripts for  [[https://github.com/HITS-MCM/tauRAMD|tauRAMD]] and [[https://github.com/HITS-MCM/MD-IFP |MD-IFP (Interaction FingerPrint Analysis of Molecular Dynamics trajectories)]] are available. 
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 +The listing of references given here is incomplete.
 ====RAMD and its applications (using the implementation in Gromacs) are described in:==== ====RAMD and its applications (using the implementation in Gromacs) are described in:====
   * D’Arrigo, G., Kokh, D.B., Nunes-Alves, A., Wade, R.C. (2024). Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD, Commun Biol 7(1):1159.[[https://doi.org/10.1038/s42003-024-06880-5]]   * D’Arrigo, G., Kokh, D.B., Nunes-Alves, A., Wade, R.C. (2024). Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD, Commun Biol 7(1):1159.[[https://doi.org/10.1038/s42003-024-06880-5]]

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