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====== Teaching, Courses and Tutorials ====== 

  * [[http://www.hbigs.uni-heidelberg.de/|HBIGS graduate school courses]] [[:courses:hbigs:hbigs|further material (restricted)]]
  * [[https://hgsfp.uni-heidelberg.de/|Physics graduate school]][[:courses:physics:graduate| Summer school course]] (restricted)
  * [[https://www.mathcomp.uni-heidelberg.de/| HGSMathComp graduate school]] [[:courses:mcm:computation:cmssbdd| Computational methods and strategies in structure-based drug design (restricted)]] 
  * [[https://www.mathcomp.uni-heidelberg.de/|HGSMathComp graduate school]] [[:courses:hgs:ratetheories|HGSMathComp graduate school - Reaction rate theories and computational methods given by Prof. Dr. Huan-Xiang Zhou at HGS Mathcomp (restricted)]]  
 
  * [[https://www.h-its.org/teachings/2019-molecular-biophysics/ |M.Sc. Computational Molecular Biophysics]] 
    * Lecture and Practical 2022 [[:courses:molbiophys:computation|Further material (restricted)]]
    * Lecture and Practical 2023 [[:courses:molbiophys:computation2023|Further material 2023 (restricted)]]
    * Lecture and Practical 2025 new [[:courses:molbiophys:2025:computation|Further material 2025 (restricted)]]

  * [[https://www.h-its.org/teachings/ss-2021-machine-learning-for-the-biomolecular-world/ |M.Sc. Machine Learning for the Molecular/Biomolecular World]] Seminar [[:courses:mcm:ml |Further material (restricted)]]
  * [[:courses:mcm:mcb:|M.Sc. Molecular and Cellular Biology]] (restricted)
  * [[:courses:mcm:biochem:|M.Sc. Biochemistry]] (restricted)
  * [[:courses:mcm:mobi:|B.Sc. and M.Sc. Molecular Biotechnology]] (restricted)
  * [[:courses:mcm:structuredynamics:|B.Sc. Structure and Dynamics of Biological Macromolecules]] (restricted)
  * [[bioinfcourse:bioinfcourse|B.Sc. bioinformatics course at Univ. Heidelberg]] (restricted)
 
  * [[:courses:mcm:euroneurotrophin:| Euroneurotrophin course on structural bioinformatics, Sep 30- Oct 1, 2020]] (restricted)

  * [[:courses:mcm:hbpmolsim:| Second HBPMolSim Training Workshop on Tools for Molecular Simulation of Neuronal Signaling Cascades, June 21-23, 2023]]. Talk slides, tutorial files and video are available at : https://flagship.kip.uni-heidelberg.de/jss/HBPm?m=SgD&mI=253 (Ebrains login required)
====== Workshops and Conferences ======
Please find a list of workshops and conferences organized by the MCM group [[conferences:conferences|here]]


Conference presentations and lectures by MCM group members available online:

  ? [[ https://www.youtube.com/watch?v=zpa8kSqQBac&list=PLmmuclhRK8_AkR3cGpFNy5ndAtnBWrxvJ&index=4 |Exploring ligand unbinding kinetics using random acceleration molecular dynamics: what can we learn?]]
  : Daria Kokh, [[http://www.alchemistry.org/wiki/2020_Workshop_on_Free_Energy_Methods_in_Drug_Design | 2020 Workshop on Free Energy Methods in Drug Design]], November 12-14, 2020  
  ? [[ https://www.youtube.com/watch?v=QFbxeovFRtg&t=101s |Computational Approaches to Protein Dynamics and Binding Kinetics for Drug Discovery]]
  : Rebecca Wade, [[https://www.mgms.org/WordPress/lecture-tour/ | Molecular Graphics and Modelling Society (MGMS) Lecture Tour Lecture]], November 24, 2020  
  ? [[ https://www.youtube.com/watch?v=X6lh_Sj-tHY |Ligand unbinding mechanisms and kinetics for T4 lysozyme mutants]]
  : Ariane Nunes Alves, [[https://www.theochemmerida.org/redlatfqt | Webinar - Red Latinoamericana de Fisicoquímica Teórica (RedLatFQT)]], February 3, 2021
  ? [[ https://www.youtube.com/watch?v=t0iKzh5vhuU |Tinkering with the linkers: a single-molecule FRET study of the linker-DNA and linker histone on a nucleosome]]
  : Madhura De, [[https://generegulation.org/fragile-nucleosome/ | #FragileNucleosome​ seminar]], March 10, 2021

====== Tutorials ======

  ?[[courses:public:vmd]]
  : VMD tutorial
  ?[[http://projects.h-its.org/mcm/projects/uppsala/|COMBINE]]
  : COMBINE analysis to derive protein structure-based QSARs (June 3-4, 2002)
  ?[[http://projects.h-its.org/mcm/projects/uppsala|GRID]]
  : GRID for structure-based drug design (June 3-4, 2002)
  ? [[http://projects.h-its.org/mcm/projects/uppsala|UHBD]]
  : UHBD to compute electrostatic binding free energy (June 3-4, 2002)
  ? [[http://projects.h-its.org/mcm/projects/uppsala|3DFS]]
  :3DFS to do a flexible ligand pharmacophore search (June 3-4, 2002)
  ? [[https://github.com/westpa/westpa/wiki/2020-MolSSI-School-on-Open-Source-Software-in-Rare-Event-Path-Sampling-Strategies|tau-RAMD]]
  : tau-RAMD tutorial: Fast estimation of drug residence times (Daria Kokh & Rebecca Wade, 2020 MolSSI School on “Open Source Software for Rare Event Sampling Strategies”, July 15, 2020)
  ? [[https://www.youtube.com/watch?v=9WarUhvNpGg&t=162s|RASPD+]]
  : RASPD+ tutorial: Fast protein-ligand binding free energy prediction using machine learning and its applications to SARS-CoV-2 targets (including introduction to machine learning methods) (Goutam Mukherjee, Drug Discovery Hackathon 2020 workshop”, August 18, 2020)