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courses:courses [2020/01/20 09:50] richter |
courses:courses [2021/02/25 21:56] wade [Teaching, Courses and Tutorials] |
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* [[:courses:mcm:computation:cmssbdd| HGSMathComp graduate school - Computational methods and strategies in structure-based drug design]] (restricted) | * [[:courses:mcm:computation:cmssbdd| HGSMathComp graduate school - Computational methods and strategies in structure-based drug design]] (restricted) | ||
* [[:courses:hgs:ratetheories|HGSMathComp graduate school - Reaction rate theories and computational methods]] (restricted) by Prof. Dr. Huan-Xiang Zhou at HGS Mathcomp | * [[:courses:hgs:ratetheories|HGSMathComp graduate school - Reaction rate theories and computational methods]] (restricted) by Prof. Dr. Huan-Xiang Zhou at HGS Mathcomp | ||
- | * [[:courses:molbiophys:computation|M.Sc. Computational Molecular Biophysics]] Lecture and Practical (restricted) | + | * [[https://www.h-its.org/teachings/2019-molecular-biophysics/ |M.Sc. Computational Molecular Biophysics]] Lecture and Practical [[:courses:molbiophys:computation|Further material (restricted)]] |
- | * [[:courses:mcm:ml |M.Sc. Machine Learning for the Molecular/Biomolecular World]] Seminar (restricted) | + | * [[https://www.h-its.org/teachings/ss-2021-machine-learning-for-the-biomolecular-world/ |M.Sc. Machine Learning for the Molecular/Biomolecular World]] Seminar [[:courses:mcm:ml |Further material (restricted)]] |
* [[:courses:mcm:mcb:|M.Sc. Molecular and Cellular Biology]] (restricted) | * [[:courses:mcm:mcb:|M.Sc. Molecular and Cellular Biology]] (restricted) | ||
* [[:courses:mcm:biochem:|M.Sc. Biochemistry]] (restricted) | * [[:courses:mcm:biochem:|M.Sc. Biochemistry]] (restricted) | ||
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* [[:courses:mcm:structuredynamics:|B.Sc. Structure and Dynamics of biological macromolecules]] (restricted) | * [[:courses:mcm:structuredynamics:|B.Sc. Structure and Dynamics of biological macromolecules]] (restricted) | ||
+ | * [[:courses:mcm:euroneurotrophin:| Euroneurotrophin course]] (restricted) | ||
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====== Workshops and Conferences ====== | ====== Workshops and Conferences ====== | ||
- | Please find a list of workshops and conferences [[conferences:conferences|here]] | + | Please find a list of workshops and conferences organized by the MCM group [[conferences:conferences|here]] |
+ | |||
+ | Conference presentations and lectures by MCM group members available online: | ||
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+ | ? [[ https://www.youtube.com/watch?v=zpa8kSqQBac&list=PLmmuclhRK8_AkR3cGpFNy5ndAtnBWrxvJ&index=4 |Exploring ligand unbinding kinetics using random acceleration molecular dynamics: what can we learn?]] | ||
+ | : Daria Kokh, [[http://www.alchemistry.org/wiki/2020_Workshop_on_Free_Energy_Methods_in_Drug_Design | 2020 Workshop on Free Energy Methods in Drug Design]], November 12-14, 2020 | ||
+ | ? [[ https://www.youtube.com/watch?v=QFbxeovFRtg&t=101s |Computational Approaches to Protein Dynamics and Binding Kinetics for Drug Discovery]] | ||
+ | : Rebecca Wade, [[https://www.mgms.org/WordPress/lecture-tour/ | Molecular Graphics and Modelling Society (MGMS) Lecture Tour Lecture]], November 24, 2020 | ||
====== Tutorials ====== | ====== Tutorials ====== | ||
+ | ?[[courses:public:vmd]] | ||
+ | : VMD tutorial | ||
?[[http://projects.h-its.org/mcm/projects/uppsala/|COMBINE]] | ?[[http://projects.h-its.org/mcm/projects/uppsala/|COMBINE]] | ||
: COMBINE analysis to derive protein structure-based QSARs (June 3-4, 2002) | : COMBINE analysis to derive protein structure-based QSARs (June 3-4, 2002) | ||
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? [[http://projects.h-its.org/mcm/projects/uppsala|3DFS]] | ? [[http://projects.h-its.org/mcm/projects/uppsala|3DFS]] | ||
:3DFS to do a flexible ligand pharmacophore search (June 3-4, 2002) | :3DFS to do a flexible ligand pharmacophore search (June 3-4, 2002) | ||
- | ?[[courses:public:vmd]] | + | ? [[https://github.com/westpa/westpa/wiki/2020-MolSSI-School-on-Open-Source-Software-in-Rare-Event-Path-Sampling-Strategies|tau-RAMD]] |
- | :VMD tutorial | + | : tau-RAMD tutorial: Fast estimation of drug residence times (Daria Kokh & Rebecca Wade, 2020 MolSSI School on “Open Source Software for Rare Event Sampling Strategies”, July 15, 2020) |
+ | ? [[https://www.youtube.com/watch?v=9WarUhvNpGg&t=162s|RASPD+]] | ||
+ | : RASPD+ tutorial: Fast protein-ligand binding free energy prediction using machine learning and its applications to SARS-CoV-2 targets (including introduction to machine learning methods) (Goutam Mukherjee, Drug Discovery Hackathon 2020 workshop”, August 18, 2020) | ||
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