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| {{:projects:mcm_logo.jpg}} | {{:projects:mcm_logo.jpg}} |
| ====== Teaching, Courses and Tutorials ====== | ====== Teaching, Courses and Tutorials ====== |
| * [[:courses:hbigs:hbigs|HBIGS graduate school courses]] (http://www.hbigs.uni-heidelberg.de/, restricted) | * [[:courses:mcm:mobimaster:index|MoBi Master Bioinformatics Course]] |
| * {{:courses:public:rw_mcb_mod3_proteinmodeling_0514.pdf|Course material for Masters MCB at Univ. Heidelberg}} (restricted) | |
| * [[bioinfcourse:bioinfcourse|Course material for bioinformatics course at Univ. Heidelberg]] (restricted) | * [[http://www.hbigs.uni-heidelberg.de/|HBIGS graduate school courses]] [[:courses:hbigs:hbigs|further material (restricted)]] |
| | * [[https://hgsfp.uni-heidelberg.de/|Physics graduate school]][[:courses:physics:graduate| Summer school course]] (restricted) |
| | * [[https://www.mathcomp.uni-heidelberg.de/| HGSMathComp graduate school]] [[:courses:mcm:computation:cmssbdd| Computational methods and strategies in structure-based drug design (restricted)]] |
| | * [[https://www.mathcomp.uni-heidelberg.de/|HGSMathComp graduate school]] [[:courses:hgs:ratetheories|HGSMathComp graduate school - Reaction rate theories and computational methods given by Prof. Dr. Huan-Xiang Zhou at HGS Mathcomp (restricted)]] |
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| | * [[https://www.h-its.org/teachings/2019-molecular-biophysics/ |M.Sc. Computational Molecular Biophysics]] |
| | * Lecture and Practical 2022 [[:courses:molbiophys:computation|Further material (restricted)]] |
| | * Lecture and Practical 2023 [[:courses:molbiophys:computation2023|Further material 2023 (restricted)]] |
| | * Lecture and Practical 2025 new [[:courses:molbiophys:2025:computation|Further material 2025 (restricted)]] |
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| | * [[https://www.h-its.org/teachings/ss-2021-machine-learning-for-the-biomolecular-world/ |M.Sc. Machine Learning for the Molecular/Biomolecular World]] Seminar [[:courses:mcm:ml |Further material (restricted)]] |
| | * [[:courses:mcm:mcb:|M.Sc. Molecular and Cellular Biology]] (restricted) |
| | * [[:courses:mcm:biochem:|M.Sc. Biochemistry]] (restricted) |
| | * [[:courses:mcm:mobi:|B.Sc. and M.Sc. Molecular Biotechnology]] (restricted) |
| | * [[:courses:mcm:structuredynamics:|B.Sc. Structure and Dynamics of Biological Macromolecules]] (restricted) |
| | * [[bioinfcourse:bioinfcourse|B.Sc. bioinformatics course at Univ. Heidelberg]] (restricted) |
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| | * [[:courses:mcm:euroneurotrophin:| Euroneurotrophin course on structural bioinformatics, Sep 30- Oct 1, 2020]] (restricted) |
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| | * [[:courses:mcm:hbpmolsim:| Second HBPMolSim Training Workshop on Tools for Molecular Simulation of Neuronal Signaling Cascades, June 21-23, 2023]]. Talk slides, tutorial files and video are available at : https://flagship.kip.uni-heidelberg.de/jss/HBPm?m=SgD&mI=253 (Ebrains login required) |
| ====== Workshops and Conferences ====== | ====== Workshops and Conferences ====== |
| Please find a list of workshops and conferences [[conferences:conferences|here]] | Please find a list of workshops and conferences organized by the MCM group [[conferences:conferences|here]] |
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| | Conference presentations and lectures by MCM group members available online: |
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| | ? [[ https://www.youtube.com/watch?v=zpa8kSqQBac&list=PLmmuclhRK8_AkR3cGpFNy5ndAtnBWrxvJ&index=4 |Exploring ligand unbinding kinetics using random acceleration molecular dynamics: what can we learn?]] |
| | : Daria Kokh, [[http://www.alchemistry.org/wiki/2020_Workshop_on_Free_Energy_Methods_in_Drug_Design | 2020 Workshop on Free Energy Methods in Drug Design]], November 12-14, 2020 |
| | ? [[ https://www.youtube.com/watch?v=QFbxeovFRtg&t=101s |Computational Approaches to Protein Dynamics and Binding Kinetics for Drug Discovery]] |
| | : Rebecca Wade, [[https://www.mgms.org/WordPress/lecture-tour/ | Molecular Graphics and Modelling Society (MGMS) Lecture Tour Lecture]], November 24, 2020 |
| | ? [[ https://www.youtube.com/watch?v=X6lh_Sj-tHY |Ligand unbinding mechanisms and kinetics for T4 lysozyme mutants]] |
| | : Ariane Nunes Alves, [[https://www.theochemmerida.org/redlatfqt | Webinar - Red Latinoamericana de Fisicoquímica Teórica (RedLatFQT)]], February 3, 2021 |
| | ? [[ https://www.youtube.com/watch?v=t0iKzh5vhuU |Tinkering with the linkers: a single-molecule FRET study of the linker-DNA and linker histone on a nucleosome]] |
| | : Madhura De, [[https://generegulation.org/fragile-nucleosome/ | #FragileNucleosome seminar]], March 10, 2021 |
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| ====== Tutorials ====== | ====== Tutorials ====== |
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| ?[[http://projects.h-its.org/mcm/software/|COMBINE]] | ?[[courses:public:vmd]] |
| | : VMD tutorial |
| | ?[[http://projects.h-its.org/mcm/projects/uppsala/|COMBINE]] |
| : COMBINE analysis to derive protein structure-based QSARs (June 3-4, 2002) | : COMBINE analysis to derive protein structure-based QSARs (June 3-4, 2002) |
| ?[[http://projects.h-its.org/mcm/projects/uppsala|GRID]] | ?[[http://projects.h-its.org/mcm/projects/uppsala|GRID]] |
| ? [[http://projects.h-its.org/mcm/projects/uppsala|3DFS]] | ? [[http://projects.h-its.org/mcm/projects/uppsala|3DFS]] |
| :3DFS to do a flexible ligand pharmacophore search (June 3-4, 2002) | :3DFS to do a flexible ligand pharmacophore search (June 3-4, 2002) |
| | ? [[https://github.com/westpa/westpa/wiki/2020-MolSSI-School-on-Open-Source-Software-in-Rare-Event-Path-Sampling-Strategies|tau-RAMD]] |
| | : tau-RAMD tutorial: Fast estimation of drug residence times (Daria Kokh & Rebecca Wade, 2020 MolSSI School on “Open Source Software for Rare Event Sampling Strategies”, July 15, 2020) |
| | ? [[https://www.youtube.com/watch?v=9WarUhvNpGg&t=162s|RASPD+]] |
| | : RASPD+ tutorial: Fast protein-ligand binding free energy prediction using machine learning and its applications to SARS-CoV-2 targets (including introduction to machine learning methods) (Goutam Mukherjee, Drug Discovery Hackathon 2020 workshop”, August 18, 2020) |
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