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PlayGround

Latex Plugin

Components

Name:

  LaTeX plugin administration

Type:

  admin

Name:

  $$...$$ syntax  for displayed LaTeX-math [ddollar]

Type:

  syntax

Name:

  \begin{displaymath} ... \end{displaymath} syntax [displaymath]

Type:

  syntax

Name:

  $...$ syntax for inline LaTeX-math [dollar]

Type:

  syntax

Name:

  \begin{eqnarray} ... \end{eqnarray} syntax [eqnarray]

Type:

  syntax

Name:

  \begin{eqnarray*} ... \end{eqnarray*} syntax [eqnarraystar]

Type:

  syntax

Name:

  \begin{equation} ... \end{equation} syntax [equation]

Type:

  syntax

Name:

  \begin{equation*} ... \end{equation*} syntax [equationstar]

Type:

  syntax

Name:

  <latex>...</latex> syntax for inline LaTeX (non-math-mode) [latex]

Type:

  syntax

Examples: $$a&=&\frac{a}{c}\times b$$ another way to say $c=b$ $u=d$

Google Charts

<gchart 350×120 pie3d #0000ff #ffffff left legend “Favorite fruits”> Apples = 33 Peaches = 23 Strawberries = 25 Peanuts = 7 </gchart>

Graphviz plugin

Graphviz example, using dot syntax

<graphviz>
digraph {
A->B;
B->C;
A->C;
}
</graphviz><graphviz>
graph MCM {
     // The label attribute can be used to change the label of a node
     a [label="Foo"];
     // Here, the node shape is changed.
     b [shape=box];
     // These edges both have different line properties
     a -- b -- c [color=blue];
     b -- d [style=dotted];
 }
</graphviz>

JMOL plugin

Syntax see http://wiki.symplus.com/en/jmol_plugin. Jmol script can be used.

Link to pdb file PDB file for Ribonucleotide Reductase <jmol 1pem.pdb.gz>

 jmolBr();
 jmolRadioGroup([
     "spacefill off",
     "spacefill 20%",
["spacefill 95%", null, "checked"]
     ], "<br />");
 jmolBr();

</jmol>

<jmol {{:pdb:1pem.pdb.gz}}>

Pubchem plugin example

http://wiki.symplus.com/en/pubchem_plugin

Link

6248

{{pubchem>link:6248}}

Image large

{{pubchem>large:6248}}

Image small

{{pubchem>small:6248}}

Pubchem formula

C₁₆H₁₈N₃NaO₄S

{{pubchem>formula:6248}}

Pubchem IUPAC

sodium;6- [(2- amino- 2- phenylacetyl)amino]- 3,3- dimethyl- 7- oxo- 4- thia- 1- azabicyclo[3.2.0]heptane- 2- carboxylate

{{pubchem>IUPAC:6248}}

PDB plugin

Show small image

http://wiki.symplus.com/en:PDB%20plugin small:1WLA

{{pdb>small:1WLA}}

Show pdb link with information

long:1WLA

{{pdb>long:1WLA}}

Uniprot plugin example

name:LACTB_HUMAN or pac:P83111

{{uniprot>name:LACTB_HUMAN}} or or {{uniprot>pac:P83111}}

Timeline example

Bob

<timeline interval=01/01/2009-31/12/2009 scale=m mark> highlight=03/07/2009-16/07/2009=bob holiday july highlight=14/07/2009-22/07/2009:557dcc=Bob sick-list 1 highlight=01/09/2009-14/09/2009 highlight=29/12/2009-30/12/2009 </timeline>

Joe

<timeline interval=01/05/2009-31/12/2009 scale=w mark> highlight=19/06/2009-04/07/2009 highlight=14/09/2009-27/09/2009 </timeline>

Where:

holidays <timeline interval=01/01/2009-10/01/2009>highlight=01/01/2009-10/01/2009</timeline>
sickness <timeline interval=01/01/2009-10/01/2009>highlight=01/01/2009-10/01/2009:557dcc</timeline>

^Bob  ^
<timeline interval=01/01/2009-31/12/2009 scale=m mark>
highlight=03/07/2009-16/07/2009=bob holiday july
highlight=14/07/2009-22/07/2009:557dcc=Bob sick-list 1
highlight=01/09/2009-14/09/2009
highlight=29/12/2009-30/12/2009
</timeline>

Pubmed example

Pubmed short

Wilmut Iet al.Nature385p810-3(1997 Feb 27)

{{pubmed>short:9039911}}

Pubmed long

Viable offspring derived from fetal and adult mammalian cells.
Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH
Nature385p810-3(1997 Feb 27)

{{pubmed>long:9039911}}

Pubmed veryshort

9039911

[[pubmed>9039911]]

Pubmed summary (XML)

<?xml version="1.0"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
<eSummaryResult>
<DocSum>
	<Id>9039911</Id>
	<Item Name="PubDate" Type="Date">1997 Feb 27</Item>
	<Item Name="EPubDate" Type="Date"></Item>
	<Item Name="Source" Type="String">Nature</Item>
	<Item Name="AuthorList" Type="List">
		<Item Name="Author" Type="String">Wilmut I</Item>
		<Item Name="Author" Type="String">Schnieke AE</Item>
		<Item Name="Author" Type="String">McWhir J</Item>
		<Item Name="Author" Type="String">Kind AJ</Item>
		<Item Name="Author" Type="String">Campbell KH</Item>
	</Item>
	<Item Name="LastAuthor" Type="String">Campbell KH</Item>
	<Item Name="Title" Type="String">Viable offspring derived from fetal and adult mammalian cells.</Item>
	<Item Name="Volume" Type="String">385</Item>
	<Item Name="Issue" Type="String">6619</Item>
	<Item Name="Pages" Type="String">810-3</Item>
	<Item Name="LangList" Type="List">
		<Item Name="Lang" Type="String">English</Item>
	</Item>
	<Item Name="NlmUniqueID" Type="String">0410462</Item>
	<Item Name="ISSN" Type="String">0028-0836</Item>
	<Item Name="ESSN" Type="String">1476-4687</Item>
	<Item Name="PubTypeList" Type="List">
		<Item Name="PubType" Type="String">Journal Article</Item>
	</Item>
	<Item Name="RecordStatus" Type="String">PubMed - indexed for MEDLINE</Item>
	<Item Name="PubStatus" Type="String">ppublish</Item>
	<Item Name="ArticleIds" Type="List">
		<Item Name="pubmed" Type="String">9039911</Item>
		<Item Name="doi" Type="String">10.1038/385810a0</Item>
	</Item>
	<Item Name="DOI" Type="String">10.1038/385810a0</Item>
	<Item Name="History" Type="List">
		<Item Name="pubmed" Type="Date">1997/02/27 00:00</Item>
		<Item Name="medline" Type="Date">1997/02/27 00:01</Item>
		<Item Name="entrez" Type="Date">1997/02/27 00:00</Item>
	</Item>
	<Item Name="References" Type="List">
		<Item Name="Comment in" Type="String">Nature. 1997 Jun 19;387(6635):754. PMID: 9194550</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Mar 13;386(6621):119. PMID: 9062180</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Apr 3;386(6624):431. PMID: 9087392</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Mar 6;386(6620):12. PMID: 9052771</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Feb 27;385(6619):753. PMID: 9039891</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Apr 3;386(6624):431. PMID: 9087390</Item>
		<Item Name="Comment in" Type="String">Nature. 2006 Apr 27;440(7088):1112. PMID: 16641972</Item>
		<Item Name="Erratum in" Type="String">Nature 1997 Mar 13;386(6621):200</Item>
	</Item>
	<Item Name="HasAbstract" Type="Integer">1</Item>
	<Item Name="PmcRefCount" Type="Integer">134</Item>
	<Item Name="FullJournalName" Type="String">Nature</Item>
	<Item Name="ELocationID" Type="String"></Item>
	<Item Name="SO" Type="String">1997 Feb 27;385(6619):810-3</Item>
</DocSum>

</eSummaryResult>

{{pubmed>summaryXML:9039911}}

Webthumb plugin

<webthumb:http://www.amazon.com|http://www.amazon.com>

<webthumb:http://www.amazon.com|http://www.amazon.com>

<webthumb:http://www.h-its.org|http://www.h-its.org>

<webthumb:http://www.h-its.org|http://www.h-its.org>

Media manager

{{media}}

Trace: • playground

Table of Contents

PlayGround

Latex Plugin

Google Charts

Graphviz plugin

JMOL plugin

Pubchem plugin example

Link

Image large

Image small

Pubchem formula

Pubchem IUPAC

PDB plugin

Show small image

Show pdb link with information

Uniprot plugin example

Timeline example

Pubmed example

Pubmed short

Pubmed long

Pubmed veryshort

Pubmed summary (XML)

Webthumb plugin

Media manager

Search

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