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PlayGround

Latex Plugin

Components

Name: 

  LaTeX plugin administration

Type: 

  admin

Name: 

  $$...$$ syntax  for displayed LaTeX-math [ddollar]

Type: 

  syntax

Name: 

  \begin{displaymath} ... \end{displaymath} syntax [displaymath]

Type: 

  syntax

Name: 

  $...$ syntax for inline LaTeX-math [dollar]

Type: 

  syntax

Name: 

  \begin{eqnarray} ... \end{eqnarray} syntax [eqnarray]

Type: 

  syntax

Name: 

  \begin{eqnarray*} ... \end{eqnarray*} syntax [eqnarraystar]

Type: 

  syntax

Name: 

  \begin{equation} ... \end{equation} syntax [equation]

Type: 

  syntax

Name: 

  \begin{equation*} ... \end{equation*} syntax [equationstar]

Type: 

  syntax

Name: 

  <latex>...</latex> syntax for inline LaTeX (non-math-mode) [latex]

Type: 

  syntax

Examples:

$$a&=&\frac{a}{c}\times b\times a$$

another way to say $c=b$ $a\times u\times b$

Google Charts

<gchart 350×120 pie3d #0000ff #ffffff left legend “Favorite fruits”> Apples = 33 Peaches = 23 Strawberries = 25 Peanuts = 7 </gchart>

Graphviz plugin

Graphviz example, using dot syntax 

<graphviz>
digraph {
A->B;
B->C;
A->C;
}
</graphviz><graphviz>
graph MCM {
     // The label attribute can be used to change the label of a node
     a [label="Foo"];
     // Here, the node shape is changed.
     b [shape=box];
     // These edges both have different line properties
     a -- b -- c [color=blue];
     b -- d [style=dotted];
 }
</graphviz>

JMOL plugin

Syntax see http://wiki.symplus.com/en/jmol_plugin. Jmol script can be used.

Link to pdb file PDB file for Ribonucleotide Reductase <jmol 1pem.pdb.gz> 

 jmolBr();
 jmolRadioGroup([
     "spacefill off",
     "spacefill 20%",
["spacefill 95%", null, "checked"]
     ], "<br />");
 jmolBr();

</jmol> 

<jmol {{:pdb:1pem.pdb.gz}}>

Pubchem plugin example

http://wiki.symplus.com/en/pubchem_plugin

6248 

{{pubchem>link:6248}}

Image large

PubChem image 6248

{{pubchem>large:6248}}

Image small

PubChem image 6248

{{pubchem>small:6248}}

Pubchem formula

{{pubchem>formula:6248}}

Pubchem IUPAC

{{pubchem>IUPAC:6248}}

PDB plugin

Show small image

http://wiki.symplus.com/en:PDB%20plugin

PDB image

{{pdb>small:1WLA}}

1WLA - Oxygen Transport
Myoglobin (horse Heart) Recombinant Wild-type
Ligand: HEM|SO4

{{pdb>long:1WLA}}

Uniprot plugin example

search?q=name%3ALACTB_HUMAN&amp;btnI=lucky or search?q=pac%3AP83111&amp;btnI=lucky 

{{uniprot>name:LACTB_HUMAN}} or or {{uniprot>pac:P83111}}

Timeline example

Bob

<timeline interval=01/01/2009-31/12/2009 scale=m mark> highlight=03/07/2009-16/07/2009=bob holiday july highlight=14/07/2009-22/07/2009:557dcc=Bob sick-list 1 highlight=01/09/2009-14/09/2009 highlight=29/12/2009-30/12/2009 </timeline>

Joe

<timeline interval=01/05/2009-31/12/2009 scale=w mark> highlight=19/06/2009-04/07/2009 highlight=14/09/2009-27/09/2009 </timeline>

Where:

  • holidays <timeline interval=01/01/2009-10/01/2009>highlight=01/01/2009-10/01/2009</timeline>
  • sickness <timeline interval=01/01/2009-10/01/2009>highlight=01/01/2009-10/01/2009:557dcc</timeline> 
^Bob  ^
<timeline interval=01/01/2009-31/12/2009 scale=m mark>
highlight=03/07/2009-16/07/2009=bob holiday july
highlight=14/07/2009-22/07/2009:557dcc=Bob sick-list 1
highlight=01/09/2009-14/09/2009
highlight=29/12/2009-30/12/2009
</timeline>

Pubmed example

Pubmed short

Wilmut Iet al.Nature385p810-3(1997 Feb 27)

{{pubmed>short:9039911}}

Pubmed long

Viable offspring derived from fetal and adult mammalian cells.
Wilmut I, Schnieke AE, McWhir J, Kind AJ, Campbell KH
Nature385p810-3(1997 Feb 27)

{{pubmed>long:9039911}}

Pubmed veryshort

9039911 

[[pubmed>9039911]]

Pubmed summary (XML)

<?xml version="1.0"?>
<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
<eSummaryResult>
<DocSum>
	<Id>9039911</Id>
	<Item Name="PubDate" Type="Date">1997 Feb 27</Item>
	<Item Name="EPubDate" Type="Date"></Item>
	<Item Name="Source" Type="String">Nature</Item>
	<Item Name="AuthorList" Type="List">
		<Item Name="Author" Type="String">Wilmut I</Item>
		<Item Name="Author" Type="String">Schnieke AE</Item>
		<Item Name="Author" Type="String">McWhir J</Item>
		<Item Name="Author" Type="String">Kind AJ</Item>
		<Item Name="Author" Type="String">Campbell KH</Item>
	</Item>
	<Item Name="LastAuthor" Type="String">Campbell KH</Item>
	<Item Name="Title" Type="String">Viable offspring derived from fetal and adult mammalian cells.</Item>
	<Item Name="Volume" Type="String">385</Item>
	<Item Name="Issue" Type="String">6619</Item>
	<Item Name="Pages" Type="String">810-3</Item>
	<Item Name="LangList" Type="List">
		<Item Name="Lang" Type="String">English</Item>
	</Item>
	<Item Name="NlmUniqueID" Type="String">0410462</Item>
	<Item Name="ISSN" Type="String">0028-0836</Item>
	<Item Name="ESSN" Type="String">1476-4687</Item>
	<Item Name="PubTypeList" Type="List">
		<Item Name="PubType" Type="String">Journal Article</Item>
	</Item>
	<Item Name="RecordStatus" Type="String">PubMed - indexed for MEDLINE</Item>
	<Item Name="PubStatus" Type="String">ppublish</Item>
	<Item Name="ArticleIds" Type="List">
		<Item Name="pubmed" Type="String">9039911</Item>
		<Item Name="doi" Type="String">10.1038/385810a0</Item>
	</Item>
	<Item Name="DOI" Type="String">10.1038/385810a0</Item>
	<Item Name="History" Type="List">
		<Item Name="pubmed" Type="Date">1997/02/27 00:00</Item>
		<Item Name="medline" Type="Date">1997/02/27 00:01</Item>
		<Item Name="entrez" Type="Date">1997/02/27 00:00</Item>
	</Item>
	<Item Name="References" Type="List">
		<Item Name="Comment in" Type="String">Nature. 1997 Jun 19;387(6635):754. PMID: 9194550</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Mar 13;386(6621):119. PMID: 9062180</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Apr 3;386(6624):431. PMID: 9087392</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Mar 6;386(6620):12. PMID: 9052771</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Feb 27;385(6619):753. PMID: 9039891</Item>
		<Item Name="Comment in" Type="String">Nature. 1997 Apr 3;386(6624):431. PMID: 9087390</Item>
		<Item Name="Comment in" Type="String">Nature. 2006 Apr 27;440(7088):1112. PMID: 16641972</Item>
		<Item Name="Erratum in" Type="String">Nature 1997 Mar 13;386(6621):200</Item>
	</Item>
	<Item Name="HasAbstract" Type="Integer">1</Item>
	<Item Name="PmcRefCount" Type="Integer">134</Item>
	<Item Name="FullJournalName" Type="String">Nature</Item>
	<Item Name="ELocationID" Type="String"></Item>
	<Item Name="SO" Type="String">1997 Feb 27;385(6619):810-3</Item>
</DocSum>

</eSummaryResult>


{{pubmed>summaryXML:9039911}}

Webthumb plugin

<webthumb:http://www.amazon.com|http://www.amazon.com> 

<webthumb:http://www.amazon.com|http://www.amazon.com>

<webthumb:http://www.h-its.org|http://www.h-its.org> 

<webthumb:http://www.h-its.org|http://www.h-its.org>

Media manager

{{media}}

Sortable Tables

Col1Col3Col3
1one25/12/2008
2two10/12/2008

https://www.dokuwiki.org/plugin:sortablejs

Column 1Column 2Column 3
1Row onefirst
2Row twosecond
3Row threethird

See more at: http://docs.oseems.com/general/web/dokuwiki/sort-table#sthash.y7WrsHTE.dpuf

Col1Col3Col3
1one25/12/2008
2two10/12/2008

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