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projects:software [2021/02/18 09:41] richter |
projects:software [2021/12/01 11:51] richter [MCM software and databases] |
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| ^ ::: | ::: | ::: | Python Interface \\ Multipipsa | ::: | ::: | | ^ ::: | ::: | ::: | Python Interface \\ Multipipsa | ::: | ::: | | ||
| ^ ::: | ::: | ::: | Webserver | (([[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447742/|webpipsa: a web server for the comparison of protein interaction properties.]])) | [[https://pipsa.h-its.org|Run Pipsa Analysis]] | | ^ ::: | ::: | ::: | Webserver | (([[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447742/|webpipsa: a web server for the comparison of protein interaction properties.]])) | [[https://pipsa.h-its.org|Run Pipsa Analysis]] | | ||
| - | ^ Sycamore | SYstems biology's Computational \\ Analysis and MOdeling Research Environment | Kinetic Data | Webserver | (([[https://academic.oup.com/bioinformatics/article/24/12/1463/196145|SYCAMORE-a systems biology computational analysis and modeling research environment.]])) | [[http://sycamore.eml.org|Sycamore webserver]] | | + | ^ Sycamore | SYstems biology's Computational \\ Analysis and MOdeling Research Environment | Kinetic Data | Webserver | (([[https://academic.oup.com/bioinformatics/article/24/12/1463/196145|SYCAMORE-a systems biology computational analysis and modeling research environment.]])) | [[http://sycamore.h-its.org|Sycamore webserver]] | |
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| ==== Methods and software developed with participation of members of MCM are available at other research groups ==== | ==== Methods and software developed with participation of members of MCM are available at other research groups ==== | ||
| - | ? [[https://projects.h-its.org/mcm/software/|COMBINE analysis]] | + | ? [[https://github.com/accsc/COMBINE|COMBINE analysis]] |
| - | : Comparative Binding Energy Analysis [[literature|Literature]] [[tutorials:tutorials|Tutorial]] [[http://farmamol.uah.es/index.php/en/2-uncategorised/4-gcombine|gCOMBINE]] | + | : Comparative Binding Energy Analysis, extended from Ariane Nunes-Alves (MCM) and merged. [[literature|Literature]] [[tutorials:tutorials|Tutorial]] [[http://farmamol.uah.es/soft/gCOMBINE/|gCOMBINE binaries]] |
| ? [[https://projects.h-its.org/mcm/projects/uppsala/tutorials/|UHBD]] | ? [[https://projects.h-its.org/mcm/projects/uppsala/tutorials/|UHBD]] | ||
| : University of Houston Brownian Dynamics [[https://projects.h-its.org/mcm/projects/uppsala/tutorials/|Tutorial]][[http://www.chee.uh.edu/faculty/briggs|Contact]] | : University of Houston Brownian Dynamics [[https://projects.h-its.org/mcm/projects/uppsala/tutorials/|Tutorial]][[http://www.chee.uh.edu/faculty/briggs|Contact]] | ||
