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projects:software [2019/06/07 14:32]
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projects:software [2019/09/18 13:04] (current)
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 ^ ::: | ::: | ::: | Webserver |  (([[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC2447742/​|webpipsa:​ a web server for the comparison of protein interaction properties.]])) ​ | [[https://​pipsa.h-its.org|Run Pipsa Analysis]] | ^ ::: | ::: | ::: | Webserver |  (([[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC2447742/​|webpipsa:​ a web server for the comparison of protein interaction properties.]])) ​ | [[https://​pipsa.h-its.org|Run Pipsa Analysis]] |
 ^ Sycamore | SYstems biology'​s Computational \\ Analysis and MOdeling Research Environment | Kinetic Data | Webserver |  (([[https://​academic.oup.com/​bioinformatics/​article/​24/​12/​1463/​196145|SYCAMORE-a systems biology computational analysis and modeling research environment.]])) ​ | [[http://​sycamore.eml.org|Sycamore webserver]] | ^ Sycamore | SYstems biology'​s Computational \\ Analysis and MOdeling Research Environment | Kinetic Data | Webserver |  (([[https://​academic.oup.com/​bioinformatics/​article/​24/​12/​1463/​196145|SYCAMORE-a systems biology computational analysis and modeling research environment.]])) ​ | [[http://​sycamore.eml.org|Sycamore webserver]] |
-^ ProSAT+ | Protein structure visualization and \\ annotation tool. \\ Display protein annotations \\ (eg mutation data from uniprot) \\ on protein structures from RCSB. | PDB or Uniprot codes | Webserver |  (([[http://​dx.doi.org/​10.1093/​protein/​gzw021|ProSAT+:​ visualizing sequence annotations on 3D structure.]])) ​ | [[http://​prosat.h-its.org/​prosat/​prosatexe?​pdbcode=1o1o|Hemoglobin example '​1o1o'​]] | +^ ProSAT+ | Protein structure visualization and \\ annotation tool. \\ Display protein annotations \\ (eg mutation data from uniprot) \\ on protein structures from RCSB. | PDB or Uniprot codes | Webserver |  (([[http://​dx.doi.org/​10.1093/​protein/​gzw021|ProSAT+:​ visualizing sequence annotations on 3D structure.]])) ​ | [[https://​prosat.h-its.org|https://​prosat.h-its.org]] \\ [[https://​prosat.h-its.org/​prosat/​prosatexe?​pdbcode=1o1o|Hemoglobin example '​1o1o'​]] | 
-^ Molsurfer | Protein structure tool \\ to link a 2D projection of a \\ macromolecular interface to a 3D \\ view of the macromolecular structures \\ [[http://​projects.h-its.org/​mcm/​software/​ADS|ADS]] Analytically Defined molecular Surfaces \\ is used within Molsurfer | PDB/PQR files \\ or PDB codes | Webserver |  (([[https://​projects.h-its.org/​dbase/​molsurfer/​doc/​tibs.html|MolSurfer:​ 2D maps to navigate 3D structures of proteins and their complexes]])) ​ (([[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC168994/​|MolSurfer:​ a macromolecular interface navigator.]])) ​ | [[https://​molsurfer.h-its.org/​demo/​1nca/​result.html|Neuraminidase 1nca example]] |+^ Molsurfer | Protein structure tool \\ to link a 2D projection of a \\ macromolecular interface to a 3D \\ view of the macromolecular structures \\ [[http://​projects.h-its.org/​mcm/​software/​ADS|ADS]] Analytically Defined molecular Surfaces \\ is used within Molsurfer | PDB/PQR files \\ or PDB codes | Webserver |  (([[https://​projects.h-its.org/​dbase/​molsurfer/​doc/​tibs.html|MolSurfer:​ 2D maps to navigate 3D structures of proteins and their complexes]])) ​ (([[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC168994/​|MolSurfer:​ a macromolecular interface navigator.]])) ​ | [[https://​molsurfer.h-its.org]] \\ [[https://​molsurfer.h-its.org/​demo/​1nca/​result.html|Neuraminidase 1nca example]] |
 ^ KBbox | KBbox: a Toolbox of \\ Computational Methods for Studying \\ the Kinetics of Molecular Binding | Search term | Webserver |  | [[https://​kbbox.h-its.org|Search KBbox]] | ^ KBbox | KBbox: a Toolbox of \\ Computational Methods for Studying \\ the Kinetics of Molecular Binding | Search term | Webserver |  | [[https://​kbbox.h-its.org|Search KBbox]] |
  
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