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projects:software [2023/10/19 11:23]
richter
projects:software [2024/05/06 14:42] (current)
richter
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 ^ PIPSA / \\ webPIPSA | Comparing electrostatic potentials \\ (or other molecular interaction fields)\\ of protein structures | Protein Structures \\ of the same fold | Standalone Software |  (([[https://​onlinelibrary.wiley.com/​doi/​abs/​10.1002/​qua.1204|Protein Interaction Property Similarity Analysis. ]])) (([[http://​www.biomedcentral.com/​1471-2105/​8/​373/​|qPIPSA:​ Relating enzymatic kinetic parameters and interaction fields]])) ​ | [[https://​projects.h-its.org/​mcmsoft/​pipsa/​4.0.2/​availability.html|Download PIPSA/​Multipipsa]] | ^ PIPSA / \\ webPIPSA | Comparing electrostatic potentials \\ (or other molecular interaction fields)\\ of protein structures | Protein Structures \\ of the same fold | Standalone Software |  (([[https://​onlinelibrary.wiley.com/​doi/​abs/​10.1002/​qua.1204|Protein Interaction Property Similarity Analysis. ]])) (([[http://​www.biomedcentral.com/​1471-2105/​8/​373/​|qPIPSA:​ Relating enzymatic kinetic parameters and interaction fields]])) ​ | [[https://​projects.h-its.org/​mcmsoft/​pipsa/​4.0.2/​availability.html|Download PIPSA/​Multipipsa]] |
 ^ ::: | ::: | ::: | Python Interface \\ Multipipsa | ::: | ::: | ^ ::: | ::: | ::: | Python Interface \\ Multipipsa | ::: | ::: |
 +^ ::: | ::: | ::: | Google colab \\ commandline | ::: | You can also run the commandline version in a google colab: https://​colab.research.google.com/​drive/​1L7-KFFe69TG-tnoYQS3Yzomqxb8t2F1k#​scrollTo=0rtGiKf7MtYh ​ |
 ^ ::: | ::: | ::: | Webserver |  (([[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC2447742/​|webpipsa:​ a web server for the comparison of protein interaction properties.]])) ​ | [[https://​pipsa.h-its.org|Run Pipsa Analysis]] | ^ ::: | ::: | ::: | Webserver |  (([[https://​www.ncbi.nlm.nih.gov/​pmc/​articles/​PMC2447742/​|webpipsa:​ a web server for the comparison of protein interaction properties.]])) ​ | [[https://​pipsa.h-its.org|Run Pipsa Analysis]] |
 ^ Sycamore | SYstems biology'​s Computational \\ Analysis and MOdeling Research Environment | Kinetic Data | Webserver |  (([[https://​academic.oup.com/​bioinformatics/​article/​24/​12/​1463/​196145|SYCAMORE-a systems biology computational analysis and modeling research environment.]])) ​ | [[http://​sycamore.h-its.org|Sycamore webserver]] | ^ Sycamore | SYstems biology'​s Computational \\ Analysis and MOdeling Research Environment | Kinetic Data | Webserver |  (([[https://​academic.oup.com/​bioinformatics/​article/​24/​12/​1463/​196145|SYCAMORE-a systems biology computational analysis and modeling research environment.]])) ​ | [[http://​sycamore.h-its.org|Sycamore webserver]] |
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 ==== Not updated software ==== ==== Not updated software ====
   ? [[http://​projects.h-its.org/​mcm/​software/​amber.html|AMBER patches]] ​   ? [[http://​projects.h-its.org/​mcm/​software/​amber.html|AMBER patches]] ​
-  : AMBER patches from the MCM group at HITS for RAMD and NPSA  ​+  : AMBER patches from the MCM  group at HITS for RAMD and NPSA  ​
   ? [[http://​projects.h-its.org/​dbase/​ps2/​index.html|ProSAT2]] ​   ? [[http://​projects.h-its.org/​dbase/​ps2/​index.html|ProSAT2]] ​
   : Select and group residue-based annotations and explore them interactively on a 3D structure of a protein   : Select and group residue-based annotations and explore them interactively on a 3D structure of a protein
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   : ProSAT+ ​ Protein structure visualization and annotation tool.    : ProSAT+ ​ Protein structure visualization and annotation tool. 
  
-  ​+
 ===== References ===== ===== References =====
  
  
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