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projects:tauramddescription [2019/06/07 09:17] richter |
projects:tauramddescription [2020/07/21 08:32] richter |
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| - | <h2>RAMD and its applications (using the implementation in NAMD) are described in:</h2> | + | <html><h2>RAMD and its applications (using the implementation in NAMD) are described in:</h2> |
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| - | <p>A tutorial describing the <a href="https://www.h-its.org/downloads/ramd/" target="_blank" rel="noreferrer noopener">τRAMD</a> process of setting up and running RAMD simulations for estimation of the relative residence time (τ) of a protein-small molecule complex can be found <a href="http://kbbox.h-its.org/toolbox/tutorials/estimation-of-relative-residence-times-of-protein-ligand-complexes-using-random-acceleration-molecular-dynamics-ramd/" target="_blank" rel="noreferrer noopener">here.</a></p> | + | <p>A tutorial describing the <a href="https://www.h-its.org/downloads/ramd/" target="_blank" rel="noreferrer noopener">τRAMD</a> process of setting up and running RAMD simulations for estimation of the relative residence time (τ) of a protein-small molecule complex can be found <a href="https://kbbox.h-its.org/toolbox/tutorials/estimation-of-relative-residence-times-of-protein-ligand-complexes-using-random-acceleration-molecular-dynamics-ramd-implementation-in-namd/" target="_blank" rel="noreferrer noopener">here.</a></p> |
| - | <a href="https://www.h-its.org/software/ramd/">Read more</a> | + | <p>A tutorial describing the <a href="https://github.com/HITS-MCM/gromacs-ramd" target="_blank" rel="noreferrer noopener">τRAMD</a> process of setting up and running RAMD simulations for estimation of the relative residence time (τ) of a protein-small molecule complex can be found <a href="https://kbbox.h-its.org/toolbox/tutorials/estimation-of-relative-residence-times-of-protein-ligand-complexes-using-random-acceleration-molecular-dynamics-ramd-implementation-in-gromacs/" target="_blank" rel="noreferrer noopener">here.</a></p> |
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| <a href="https://www.h-its.org/downloads/ramd/">Read more</a> | <a href="https://www.h-its.org/downloads/ramd/">Read more</a> | ||
| </div> | </div> | ||
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