Functions/Subroutines | |
| subroutine | diagonalize (nsite, a0, eigenvalues, eigenvectors) |
| Main function to call for the diagonalization. | |
| subroutine | rs (nm, n, a, w, matz, z, fv1, fv2, ierr) |
| Called by diagonalization. | |
| subroutine | tql1 (n, d, e, ierr) |
| subroutine | tql2 (nm, n, d, e, z, ierr) |
| Called by diagonalization. | |
| subroutine | tred1 (nm, n, a, d, e, e2) |
| Called by diagonalization. | |
| subroutine | tred2 (nm, n, a, d, e, z) |
| Called by diagonalization. | |
| double precision function | pythag (a, b) |
| Called by diagonalization. | |
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References: see also http://mcm.h-its.org/sda7/do:c/doc_sda7/references.html:
Brownian dynamics simulation of protein-protein diffusional encounter. (1998) Methods, 14, 329-341.
SDA 7: A modular and parallel implementation of the simulation of diffusional association software. Journal of computational chemistry 36.21 (2015): 1631-1645.
Authors: M.Martinez, N.J.Bruce, J.Romanowska, D.B.Kokh, P.Mereghetti, X. Yu, M. Ozboyaci, M. Reinhardt, P. Friedrich, R.R.Gabdoulline, S.Richter and R.C.Wade
Group all functions and subfunctions for the diagonalization
| subroutine diagonalize | ( | integer(kind=8) | nsite, |
| real ( kind=8 ), dimension ( nsite, nsite) | a0, | ||
| real ( kind=8 ), dimension ( nsite ) | eigenvalues, | ||
| real ( kind=8 ), dimension ( nsite, nsite) | eigenvectors | ||
| ) |
Main function to call for the diagonalization.
| nsite | : number of sites |
| a0 | : matrix to diagonalize |
| eigenvalues | : return eigenvalues |
| eigenvectors | : return eigenvectors |
Called by diagonalization.
| subroutine rs | ( | integer (kind=8) | nm, |
| integer (kind=8) | n, | ||
| double precision, dimension(nm,n) | a, | ||
| double precision, dimension(n) | w, | ||
| integer (kind=8) | matz, | ||
| double precision, dimension(nm,n) | z, | ||
| double precision, dimension(n) | fv1, | ||
| double precision, dimension(n) | fv2, | ||
| integer (kind=8) | ierr | ||
| ) |
Called by diagonalization.
| subroutine tql1 | ( | integer(kind=8) | n, |
| double precision, dimension(n) | d, | ||
| double precision, dimension(n) | e, | ||
| integer(kind=8) | ierr | ||
| ) |
| subroutine tql2 | ( | integer(kind=8) | nm, |
| integer(kind=8) | n, | ||
| double precision, dimension(n) | d, | ||
| double precision, dimension(n) | e, | ||
| double precision, dimension(nm,n) | z, | ||
| integer(kind=8) | ierr | ||
| ) |
Called by diagonalization.
| subroutine tred1 | ( | integer | nm, |
| integer | n, | ||
| double precision, dimension(nm,n) | a, | ||
| double precision, dimension(n) | d, | ||
| double precision, dimension(n) | e, | ||
| double precision, dimension(n) | e2 | ||
| ) |
Called by diagonalization.
1.9.8
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