Functions/Subroutines | |
subroutine | diagonalize (nsite, a0, eigenvalues, eigenvectors) |
Main function to call for the diagonalization. More... | |
subroutine | rs (nm, n, a, w, matz, z, fv1, fv2, ierr) |
Called by diagonalization. More... | |
subroutine | tql1 (n, d, e, ierr) |
subroutine | tql2 (nm, n, d, e, z, ierr) |
Called by diagonalization. More... | |
subroutine | tred1 (nm, n, a, d, e, e2) |
Called by diagonalization. More... | |
subroutine | tred2 (nm, n, a, d, e, z) |
Called by diagonalization. More... | |
double precision function | pythag (a, b) |
Called by diagonalization. More... | |
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References: see also http://mcm.h-its.org/sda7/do:c/doc_sda7/references.html:
Brownian dynamics simulation of protein-protein diffusional encounter. (1998) Methods, 14, 329-341.
SDA 7: A modular and parallel implementation of the simulation of diffusional association software. Journal of computational chemistry 36.21 (2015): 1631-1645.
Authors: M.Martinez, N.J.Bruce, J.Romanowska, D.B.Kokh, P.Mereghetti, X. Yu, M. Ozboyaci, M. Reinhardt, P. Friedrich, R.R.Gabdoulline, S.Richter and R.C.Wade
Group all functions and subfunctions for the diagonalization
subroutine diagonalize | ( | integer(kind=8) | nsite, |
real ( kind=8 ), dimension ( nsite, nsite) | a0, | ||
real ( kind=8 ), dimension ( nsite ) | eigenvalues, | ||
real ( kind=8 ), dimension ( nsite, nsite) | eigenvectors | ||
) |
Main function to call for the diagonalization.
nsite | : number of sites |
a0 | : matrix to diagonalize |
eigenvalues | : return eigenvalues |
eigenvectors | : return eigenvectors |
double precision function pythag | ( | double precision | a, |
double precision | b | ||
) |
Called by diagonalization.
subroutine rs | ( | integer (kind=8) | nm, |
integer (kind=8) | n, | ||
double precision, dimension(nm,n) | a, | ||
double precision, dimension(n) | w, | ||
integer (kind=8) | matz, | ||
double precision, dimension(nm,n) | z, | ||
double precision, dimension(n) | fv1, | ||
double precision, dimension(n) | fv2, | ||
integer (kind=8) | ierr | ||
) |
Called by diagonalization.
subroutine tql1 | ( | integer(kind=8) | n, |
double precision, dimension(n) | d, | ||
double precision, dimension(n) | e, | ||
integer(kind=8) | ierr | ||
) |
subroutine tql2 | ( | integer(kind=8) | nm, |
integer(kind=8) | n, | ||
double precision, dimension(n) | d, | ||
double precision, dimension(n) | e, | ||
double precision, dimension(nm,n) | z, | ||
integer(kind=8) | ierr | ||
) |
Called by diagonalization.
subroutine tred1 | ( | integer | nm, |
integer | n, | ||
double precision, dimension(nm,n) | a, | ||
double precision, dimension(n) | d, | ||
double precision, dimension(n) | e, | ||
double precision, dimension(n) | e2 | ||
) |
Called by diagonalization.
subroutine tred2 | ( | integer | nm, |
integer | n, | ||
double precision, dimension(nm,n) | a, | ||
double precision, dimension(n) | d, | ||
double precision, dimension(n) | e, | ||
double precision, dimension(nm,n) | z | ||
) |
Called by diagonalization.